Examples

This section of the documentation contains code examples generated from Jupyter notebooks demonstrating how to use the Python API in simple use-cases.

Feel free to open a new ticket on the issue tracker if you feel like some parts of the library are not covered sufficiently, or if you have an interesting example to provide.

• Basic examples from the trimAl documentation
  • Example 1
  • Example 2
  • Example 3
  • Example 4
  • Example 5
  • Example 6
  • Example 10
• Trimming an alignment to build an HMM
  • Creating the alignment
  • Trimming in automatic mode
  • Building a HMM from the trimmed alignment
  • Compare the HMMs