API Reference¶

Alignment¶

`pytrimal.Alignment`	A multiple sequence alignment.
`pytrimal.TrimmedAlignment`	A multiple sequence alignment that has been trimmed.

`pytrimal.BaseTrimmer`	A sequence alignment trimmer.
`pytrimal.AutomaticTrimmer`	A sequence alignment trimmer with automatic parameter detection.
`pytrimal.ManualTrimmer`	A sequence alignment trimmer with manually defined thresholds.

A similarity matrix for biological sequence characters.