Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

Unreleased

v0.2.2 - 2022-06-08

Added

  • Keyword arguments to specify the half-window sizes in manual trimmer.

  • Alignment.dump and Alignment.dumps function to write an alignment to a file, file-like object, or string.

  • Optimized implementation of Similarity::calculateVectors.

Changed

  • Use faster implementation of SSE2 horizontal sum based on _mm_sad_epu8.

v0.2.1 - 2022-06-06

Fixed

  • Missing SSE2 files in source distribution.

v0.2.0 - 2022-06-06

Added

  • Vendored cpu_features library to perform runtime detection of CPU features.

  • SIMD implementation of the similarity statistic code with SSE2 instructions.

Fixed

  • Compilation on platforms without OpenMP by adding an empty omp.h header file.

v0.1.2 - 2022-06-04

Added

  • Python constructor and buffer protocol support for SimilarityMatrix.

  • SimilarityMatrix.similarity method to get the similarity between two characters instead.

Fixed

  • Source compilation failing because of source files in the pytrimal folder.

v0.1.1 - 2022-06-03

Added

  • Type annotations for all classes of the pytrimal extension module.

Fixed

  • Cython header files not being included in source distribution.

v0.1.0 - 2022-06-02

Initial release.