Index

_

__init__() (pytrimal.Alignment method) (pytrimal.AutomaticTrimmer method) (pytrimal.BaseTrimmer method) (pytrimal.ManualTrimmer method) (pytrimal.SimilarityMatrix method) (pytrimal.TrimmedAlignment method)

A

aa() (pytrimal.SimilarityMatrix method) Alignment (class in pytrimal)

AlignmentResidues (class in pytrimal) AlignmentSequences (class in pytrimal) AutomaticTrimmer (class in pytrimal)

B

BaseTrimmer (class in pytrimal)

C

copy() (pytrimal.Alignment method)

D

distance() (pytrimal.SimilarityMatrix method)

L

load() (pytrimal.Alignment method)

M

ManualTrimmer (class in pytrimal)

N

names (pytrimal.Alignment attribute) (pytrimal.TrimmedAlignment attribute)

nt() (pytrimal.SimilarityMatrix method)

R

residues (pytrimal.Alignment attribute)

S

sequences (pytrimal.Alignment attribute) (pytrimal.TrimmedAlignment attribute)

similarity() (pytrimal.SimilarityMatrix method) SimilarityMatrix (class in pytrimal)

T

trim() (pytrimal.AutomaticTrimmer method) (pytrimal.BaseTrimmer method) (pytrimal.ManualTrimmer method)

TrimmedAlignment (class in pytrimal)